anndataR on Bioconductor
(https://anndataR.scverse.org). anndataR provides a pure R
implementation of the AnnData data structure without requiring Python, along
with native .h5ad file reading/writing and conversion to/from
SingleCellExperiment and Seurat objects. A migration guide is available
at vignette("migration_to_anndataR", package = "anndata").FUNCTIONALITY: Added support for read_zarr() and write_zarr() (PR #33).
BUG FIX: Use the right interface for the all.equal() function (PR #32).
BUG FIX: Add py_to_r converter for anndata.abc._AbstractCSDataset (PR #34).
MINOR CHANGES: Ignore python warnings when running tests (PR #34).
MAJOR CHANGES: Update reticulate package dependency management (PR #36).
MINOR CHANGES: Clean up roxygen code (PR #36).
MINOR CHANGES: Use cli for generating errors (PR #36).
backed=TRUE.BUG FIX: Set dimnames on layer views as well (#16).
BUG FIX: Fix Github Actions for R CMD Check, test-coverage and pkgdown.
DOCUMENTATION: Fix pkgdown config structure by adding missing topics.
DOCUMENTATION: Regenerate the Rd files using the current CRAN version of roxygen2.
BUG FIX write_h5ad(ad): Fix function pointer (#8).
BUG FIX: Add manual converter function for converting a csc_matrix to dgCMatrix (#11).
MINOR CHANGE: Add getters and setter for the internal python objects.
MINOR CHANGE: Alter how and when Python objects get converted to R and vice versa.
DOCUMENTATION: Documentation site is available at https://anndata.dynverse.org!
DOCUMENTATION: Added two basic vignettes.
MINOR CHANGE: Add wrapper classes for Raw and Layers objects.
MAJOR CHANGE: Calling ad[..., ...] now correctly returns a view of ad instead of returning a matrix.
TESTING: Extend tests based on theislab/anndata repository.
MINOR CHANGES: Updated Python requirements to anndata 0.7.5.
NEW FEATURE AnnData(): Added obsp, varp, and raw objects to parameters.
TESTING: Added more tests based on theislab/anndata repository.