{
  "_id": "6a48b609e06c18f0a65481e6",
  "Package": "babelwhale",
  "Title": "Talking to 'Docker' and 'Singularity' Containers",
  "Version": "1.2.0",
  "Authors@R": "c(person(given = \"Robrecht\",\nfamily = \"Cannoodt\",\nrole = c(\"aut\", \"cre\"),\nemail = \"rcannood@gmail.com\",\ncomment = c(ORCID = \"0000-0003-3641-729X\", github = \"rcannood\")),\nperson(given = \"Wouter\",\nfamily = \"Saelens\",\nrole = \"aut\",\nemail = \"wouter.saelens@gmail.com\",\ncomment = c(ORCID = \"0000-0002-7114-6248\", github = \"zouter\")),\nperson(given = \"Joel\",\nfamily = \"Nitta\",\nrole = \"aut\",\nemail = \"joelnitta@gmail.com\",\ncomment = c(ORCID = \"0000-0003-4719-7472\", github = \"joelnitta\")))",
  "Description": "Provides a unified interface to interact with 'docker' and\n'singularity' containers.  You can execute a command inside a\ncontainer, mount a volume or copy a file.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/dynverse/babelwhale",
  "BugReports": "https://github.com/dynverse/babelwhale/issues",
  "SystemRequirements": "Docker and/or Singularity (>=3.0)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "cmake git make libicu-dev libuv1-dev",
  "Repository": "https://dynverse.r-universe.dev",
  "Date/Publication": "2023-07-14 19:28:32 UTC",
  "RemoteUrl": "https://github.com/dynverse/babelwhale",
  "RemoteRef": "HEAD",
  "RemoteSha": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 06:45:47 UTC",
    "User": "root"
  },
  "Author": "Robrecht Cannoodt [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3641-729X>, github: rcannood),\nWouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>,\ngithub: zouter),\nJoel Nitta [aut] (ORCID: <https://orcid.org/0000-0003-4719-7472>,\ngithub: joelnitta)",
  "Maintainer": "Robrecht Cannoodt <rcannood@gmail.com>",
  "_user": "dynverse",
  "_type": "src",
  "_file": "babelwhale_1.2.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/e6a03d1448f6c2fd60a312482a19247310d5eb07e663b3e54861de5228e54dbd",
  "_filesize": 478845,
  "_sha256": "e6a03d1448f6c2fd60a312482a19247310d5eb07e663b3e54861de5228e54dbd",
  "_expires": "2026-10-12T07:28:07.000Z",
  "_created": "2026-07-04T06:45:47.000Z",
  "_published": "2026-07-04T07:28:09.312Z",
  "_jobs": [
    {
      "job": 85111347585,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8079281737"
    },
    {
      "job": 85111347591,
      "time": 144,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8079281729"
    },
    {
      "job": 85111347584,
      "time": 95,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8079566205"
    },
    {
      "job": 85111347592,
      "time": 114,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8079592133"
    },
    {
      "job": 85111181263,
      "time": 162,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8079264915"
    },
    {
      "job": 85111347580,
      "time": 151,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8079282506"
    },
    {
      "job": 85111347609,
      "time": 132,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8079280963"
    },
    {
      "job": 85111347593,
      "time": 120,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8079278972"
    },
    {
      "job": 85111347587,
      "time": 96,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8079276240"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435",
  "_status": "success",
  "_upstream": "https://github.com/dynverse/babelwhale",
  "_commit": {
    "id": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
    "author": "Robrecht Cannoodt <rcannood@gmail.com>",
    "committer": "Robrecht Cannoodt <rcannood@gmail.com>",
    "message": "update cran comments\n",
    "time": 1689362912
  },
  "_maintainer": {
    "name": "Robrecht Cannoodt",
    "email": "rcannood@gmail.com",
    "login": "rcannood",
    "linkedin": "in/robrechtcannoodt",
    "orcid": "0000-0003-3641-729X",
    "description": "CEO and Founder at @edaro",
    "uuid": 553642
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "crayon",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "dynutils",
      "role": "Imports"
    },
    {
      "package": "processx",
      "version": ">= 3.5.0",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "digest",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "dynverse",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 24,
  "_contributors": [
    {
      "user": "rcannood",
      "count": 115,
      "uuid": 553642
    },
    {
      "user": "zouter",
      "count": 65,
      "uuid": 5727377
    },
    {
      "user": "joelnitta",
      "count": 3,
      "uuid": 13459362
    }
  ],
  "_userbio": {
    "uuid": 31854945,
    "type": "organization",
    "name": "dynverse: benchmarking, constructing and interpreting single-cell trajectories",
    "followers": 66,
    "description": "The dynverse is an open set of packages to benchmark, construct and interpret single-cell trajectories. See https://dynverse.org for an overview"
  },
  "_downloads": {
    "count": 595,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/babelwhale"
  },
  "_devurl": "https://github.com/dynverse/babelwhale",
  "_searchresults": 20,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/babelwhale.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dynverse/babelwhale",
  "_realowner": "dynverse",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2019-07-09"
    },
    {
      "version": "1.0.1",
      "date": "2019-10-03"
    },
    {
      "version": "1.0.2",
      "date": "2021-06-02"
    },
    {
      "version": "1.0.3",
      "date": "2021-06-25"
    },
    {
      "version": "1.1.0",
      "date": "2022-08-18"
    },
    {
      "version": "1.2.0",
      "date": "2023-07-15"
    }
  ],
  "_exports": [
    "copy_file",
    "create_config",
    "create_docker_config",
    "create_singularity_config",
    "get_default_config",
    "list_docker_images",
    "pull_container",
    "read_file",
    "run",
    "run_auto_mount",
    "set_default_config",
    "test_docker_installation",
    "test_singularity_installation"
  ],
  "_help": [
    {
      "page": "babelwhale",
      "title": "Talking to both Docker and Singularity containers from R",
      "topics": [
        "babelwhale"
      ]
    },
    {
      "page": "copy_file",
      "title": "Copy a file from a container to the host system",
      "topics": [
        "copy_file"
      ]
    },
    {
      "page": "create_config",
      "title": "Backend configuration for containerisation",
      "topics": [
        "create_config",
        "create_docker_config",
        "create_singularity_config",
        "get_default_config",
        "set_default_config"
      ]
    },
    {
      "page": "list_docker_images",
      "title": "List docker containers",
      "topics": [
        "list_docker_images"
      ]
    },
    {
      "page": "pull_container",
      "title": "Pull a container from dockerhub",
      "topics": [
        "pull_container"
      ]
    },
    {
      "page": "read_file",
      "title": "Read a file from a container",
      "topics": [
        "read_file"
      ]
    },
    {
      "page": "run",
      "title": "Run a containerised command, and wait until finished",
      "topics": [
        "run"
      ]
    },
    {
      "page": "run_auto_mount",
      "title": "Run a containerised command with automatic mounting of files",
      "topics": [
        "run_auto_mount"
      ]
    },
    {
      "page": "singularity_image_path",
      "title": "Determine the cached path of singularity images",
      "topics": [
        "singularity_image_path"
      ]
    },
    {
      "page": "test_docker_installation",
      "title": "Tests whether docker is correctly installed and available",
      "topics": [
        "test_docker_installation"
      ]
    },
    {
      "page": "test_singularity_installation",
      "title": "Tests whether singularity is correctly installed and available",
      "topics": [
        "test_singularity_installation"
      ]
    }
  ],
  "_readme": "https://github.com/dynverse/babelwhale/raw/HEAD/README.md",
  "_rundeps": [
    "assertthat",
    "cli",
    "crayon",
    "desc",
    "digest",
    "dplyr",
    "dynutils",
    "fs",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "processx",
    "proxyC",
    "ps",
    "purrr",
    "R6",
    "Rcpp",
    "RcppArmadillo",
    "remotes",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 5.15836249209525,
  "_indexed": true,
  "_nocasepkg": "babelwhale",
  "_universes": [
    "dynverse",
    "rcannood"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-07-04T06:47:53.000Z",
      "distro": "resolute",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/fde7b158315bcd655ff54f28b065f2948d0bfbff788c2fb7b0df8c04ad3489d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-07-04T06:47:55.000Z",
      "distro": "resolute",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/e12cd4f7c91fc01abd258eca5bfc5315130233bef0668a50dfe9d8d3aaab3ab7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-07-04T07:24:04.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/6895fc2494d96bf077a39b45b567caeb3918d04a989e5ffd9ed0eba567c1e39d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-07-04T07:27:21.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/b1270cfaa9ca35fbaa7fd11a161f19a1b44930c76e235006d1e369f80f086022",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.0",
      "date": "2026-07-04T06:48:32.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/436d9c70987ef8dcee427b9bf319ac44e25ed40d031f0e104fdb4ca62f429089",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-07-04T06:47:37.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/e27d1a07d18d77f9cd121c52f806a3b58a455753e4d24b90b5e4b2c4e57d25b6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-07-04T06:47:05.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/4627298a548ca14807f186d1a19e44bb12e4ebf20b17301bcd4d00cc9e55b309",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-07-04T06:46:55.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "https://r2.ropensci.org/cde81900a6c0810913437f5875b911a71ad2ec900f4b74a697f6271c1c97b90c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/28698073435"
    }
  ]
}