{
  "_id": "6a2139abcd65a98ecbd279ad",
  "Package": "babelwhale",
  "Title": "Talking to 'Docker' and 'Singularity' Containers",
  "Version": "1.2.0",
  "Authors@R": "c(person(given = \"Robrecht\",\nfamily = \"Cannoodt\",\nrole = c(\"aut\", \"cre\"),\nemail = \"rcannood@gmail.com\",\ncomment = c(ORCID = \"0000-0003-3641-729X\", github = \"rcannood\")),\nperson(given = \"Wouter\",\nfamily = \"Saelens\",\nrole = \"aut\",\nemail = \"wouter.saelens@gmail.com\",\ncomment = c(ORCID = \"0000-0002-7114-6248\", github = \"zouter\")),\nperson(given = \"Joel\",\nfamily = \"Nitta\",\nrole = \"aut\",\nemail = \"joelnitta@gmail.com\",\ncomment = c(ORCID = \"0000-0003-4719-7472\", github = \"joelnitta\")))",
  "Description": "Provides a unified interface to interact with 'docker' and\n'singularity' containers.  You can execute a command inside a\ncontainer, mount a volume or copy a file.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/dynverse/babelwhale",
  "BugReports": "https://github.com/dynverse/babelwhale/issues",
  "SystemRequirements": "Docker and/or Singularity (>=3.0)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "cmake git make libicu-dev libuv1-dev",
  "Repository": "https://dynverse.r-universe.dev",
  "Date/Publication": "2023-07-14 19:28:32 UTC",
  "RemoteUrl": "https://github.com/dynverse/babelwhale",
  "RemoteRef": "HEAD",
  "RemoteSha": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 08:36:11 UTC",
    "User": "root"
  },
  "Author": "Robrecht Cannoodt [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3641-729X>, github: rcannood),\nWouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>,\ngithub: zouter),\nJoel Nitta [aut] (ORCID: <https://orcid.org/0000-0003-4719-7472>,\ngithub: joelnitta)",
  "Maintainer": "Robrecht Cannoodt <rcannood@gmail.com>",
  "MD5sum": "2621945da906626c31568f094c1f613d",
  "_user": "dynverse",
  "_type": "src",
  "_file": "babelwhale_1.2.0.tar.gz",
  "_fileid": "3749f8c4976bed71ca83a2f626836578afedf966ffe3036b1549fa2b5df7b7c2",
  "_filesize": 475833,
  "_sha256": "3749f8c4976bed71ca83a2f626836578afedf966ffe3036b1549fa2b5df7b7c2",
  "_created": "2026-06-04T08:36:11.000Z",
  "_published": "2026-06-04T08:39:07.344Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79481111327,
      "time": 139,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7406850966"
    },
    {
      "job": 79481111322,
      "time": 135,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406849411"
    },
    {
      "job": 79481111321,
      "time": 135,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7406849138"
    },
    {
      "job": 79481111364,
      "time": 119,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406843607"
    },
    {
      "job": 79480660733,
      "time": 159,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406799849"
    },
    {
      "job": 79481111282,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406838645"
    },
    {
      "job": 79481111298,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7406837205"
    },
    {
      "job": 79481111285,
      "time": 102,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7406837561"
    },
    {
      "job": 79481111315,
      "time": 123,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406844595"
    }
  ],
  "_buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/dynverse/babelwhale",
  "_commit": {
    "id": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
    "author": "Robrecht Cannoodt <rcannood@gmail.com>",
    "committer": "Robrecht Cannoodt <rcannood@gmail.com>",
    "message": "update cran comments\n",
    "time": 1689362912
  },
  "_maintainer": {
    "name": "Robrecht Cannoodt",
    "email": "rcannood@gmail.com",
    "login": "rcannood",
    "linkedin": "in/robrechtcannoodt",
    "orcid": "0000-0003-3641-729X",
    "description": "CEO and Founder at @edaro",
    "uuid": 553642
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "crayon",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "dynutils",
      "role": "Imports"
    },
    {
      "package": "processx",
      "version": ">= 3.5.0",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "digest",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "dynverse",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 24,
  "_contributors": [
    {
      "user": "rcannood",
      "count": 115,
      "uuid": 553642
    },
    {
      "user": "zouter",
      "count": 65,
      "uuid": 5727377
    },
    {
      "user": "joelnitta",
      "count": 3,
      "uuid": 13459362
    }
  ],
  "_userbio": {
    "uuid": 31854945,
    "type": "organization",
    "name": "dynverse: benchmarking, constructing and interpreting single-cell trajectories",
    "description": "The dynverse is an open set of packages to benchmark, construct and interpret single-cell trajectories. See https://dynverse.org for an overview"
  },
  "_downloads": {
    "count": 501,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/babelwhale"
  },
  "_devurl": "https://github.com/dynverse/babelwhale",
  "_searchresults": 17,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/babelwhale.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dynverse/babelwhale",
  "_realowner": "dynverse",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2019-07-09"
    },
    {
      "version": "1.0.1",
      "date": "2019-10-03"
    },
    {
      "version": "1.0.2",
      "date": "2021-06-02"
    },
    {
      "version": "1.0.3",
      "date": "2021-06-25"
    },
    {
      "version": "1.1.0",
      "date": "2022-08-18"
    },
    {
      "version": "1.2.0",
      "date": "2023-07-15"
    }
  ],
  "_exports": [
    "copy_file",
    "create_config",
    "create_docker_config",
    "create_singularity_config",
    "get_default_config",
    "list_docker_images",
    "pull_container",
    "read_file",
    "run",
    "run_auto_mount",
    "set_default_config",
    "test_docker_installation",
    "test_singularity_installation"
  ],
  "_help": [
    {
      "page": "babelwhale",
      "title": "Talking to both Docker and Singularity containers from R",
      "topics": [
        "babelwhale"
      ]
    },
    {
      "page": "copy_file",
      "title": "Copy a file from a container to the host system",
      "topics": [
        "copy_file"
      ]
    },
    {
      "page": "create_config",
      "title": "Backend configuration for containerisation",
      "topics": [
        "create_config",
        "create_docker_config",
        "create_singularity_config",
        "get_default_config",
        "set_default_config"
      ]
    },
    {
      "page": "list_docker_images",
      "title": "List docker containers",
      "topics": [
        "list_docker_images"
      ]
    },
    {
      "page": "pull_container",
      "title": "Pull a container from dockerhub",
      "topics": [
        "pull_container"
      ]
    },
    {
      "page": "read_file",
      "title": "Read a file from a container",
      "topics": [
        "read_file"
      ]
    },
    {
      "page": "run",
      "title": "Run a containerised command, and wait until finished",
      "topics": [
        "run"
      ]
    },
    {
      "page": "run_auto_mount",
      "title": "Run a containerised command with automatic mounting of files",
      "topics": [
        "run_auto_mount"
      ]
    },
    {
      "page": "singularity_image_path",
      "title": "Determine the cached path of singularity images",
      "topics": [
        "singularity_image_path"
      ]
    },
    {
      "page": "test_docker_installation",
      "title": "Tests whether docker is correctly installed and available",
      "topics": [
        "test_docker_installation"
      ]
    },
    {
      "page": "test_singularity_installation",
      "title": "Tests whether singularity is correctly installed and available",
      "topics": [
        "test_singularity_installation"
      ]
    }
  ],
  "_readme": "https://github.com/dynverse/babelwhale/raw/HEAD/README.md",
  "_rundeps": [
    "assertthat",
    "cli",
    "crayon",
    "desc",
    "digest",
    "dplyr",
    "dynutils",
    "fs",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "processx",
    "proxyC",
    "ps",
    "purrr",
    "R6",
    "Rcpp",
    "RcppArmadillo",
    "remotes",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 5.087781417809543,
  "_indexed": true,
  "_nocasepkg": "babelwhale",
  "_universes": [
    "dynverse",
    "rcannood"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-06-04T08:38:15.000Z",
      "distro": "noble",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "708149499474e8533850002a4421eb0d04709dbd5ad01ca9d30e20fe03ed317b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-06-04T08:38:14.000Z",
      "distro": "noble",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "c7e8c8490ce950baf81c5850a55eed7a92cc54df63554c6ab8004ace6be70de6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-06-04T08:38:10.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "cbb4d0af94b9bfde0df39a7f1a227f37bd9142ec834e7df576aa53e2602c526a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-06-04T08:37:59.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "517f1ef279e7069caf030c4d043314848eec3e63a4052cf8faec19001e78ee0e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.0",
      "date": "2026-06-04T08:38:15.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "24301b5bdbf5f57c6b7a0079e859e18dccd45e27bc3a4aa1ddcc2b2406f0654f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-06-04T08:37:31.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "59789700e7cba2c8bc01bacde360075233e9837d0a26d41be8760fa6decba695",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-06-04T08:37:23.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "29f832e6f36d18fe278a62d4994bf78b58568761f8c0766bd324918ed20f59bf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-06-04T08:37:29.000Z",
      "commit": "61e5ebfef09b6159c0a9524adeae9fe2da9215be",
      "fileid": "1240905be868125c035f71052eb044af617ae40220569fed9d6f58db0039e7ed",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/26940519008"
    }
  ]
}