{
  "_id": "6a55d34bff0138dec5d695bd",
  "Package": "dyndimred",
  "Type": "Package",
  "Title": "Dimensionality Reduction Methods in a Common Format",
  "Version": "1.0.4",
  "Authors@R": "c(\nperson(\n\"Robrecht\", \"Cannoodt\",\nemail = \"rcannood@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3641-729X\", github = \"rcannood\")\n),\nperson(\n\"Wouter\", \"Saelens\",\nemail = \"wouter.saelens@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7114-6248\", github = \"zouter\")\n)\n)",
  "Description": "Provides a common interface for applying dimensionality\nreduction methods, such as Principal Component Analysis\n('PCA'), Independent Component Analysis ('ICA'), diffusion\nmaps, Locally-Linear Embedding ('LLE'), t-distributed\nStochastic Neighbor Embedding ('t-SNE'), and Uniform Manifold\nApproximation and Projection ('UMAP'). Has built-in support for\nsparse matrices.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "Roxygen": "list(markdown = TRUE)",
  "URL": "https://github.com/dynverse/dyndimred",
  "BugReports": "https://github.com/dynverse/dyndimred/issues",
  "Config/pak/sysreqs": "git libicu-dev",
  "Repository": "https://dynverse.r-universe.dev",
  "Date/Publication": "2021-03-23 08:50:42 UTC",
  "RemoteUrl": "https://github.com/dynverse/dyndimred",
  "RemoteRef": "HEAD",
  "RemoteSha": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-14 06:07:21 UTC",
    "User": "root"
  },
  "Author": "Robrecht Cannoodt [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3641-729X>, github: rcannood),\nWouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>,\ngithub: zouter)",
  "Maintainer": "Robrecht Cannoodt <rcannood@gmail.com>",
  "_user": "dynverse",
  "_type": "src",
  "_file": "dyndimred_1.0.4.tar.gz",
  "_fileid": "https://r2.ropensci.org/f1460ce052561ec2ae3de7da7df4b6652dcb16daa205911d3185ca8d0e0f3bed",
  "_filesize": 479177,
  "_sha256": "f1460ce052561ec2ae3de7da7df4b6652dcb16daa205911d3185ca8d0e0f3bed",
  "_expires": "2026-10-22T06:12:25.000Z",
  "_created": "2026-07-14T06:07:21.000Z",
  "_published": "2026-07-14T06:12:27.127Z",
  "_jobs": [
    {
      "job": 87012833919,
      "time": 267,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8301917729"
    },
    {
      "job": 87012833950,
      "time": 222,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8301904566"
    },
    {
      "job": 87012833952,
      "time": 115,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8301873673"
    },
    {
      "job": 87012834490,
      "time": 119,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8301874687"
    },
    {
      "job": 87012235782,
      "time": 242,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8301839121"
    },
    {
      "job": 87012833890,
      "time": 166,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8301887738"
    },
    {
      "job": 87012833961,
      "time": 148,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8301882793"
    },
    {
      "job": 87012833983,
      "time": 145,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8301882519"
    },
    {
      "job": 87012833953,
      "time": 152,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8301883897"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210",
  "_status": "success",
  "_upstream": "https://github.com/dynverse/dyndimred",
  "_commit": {
    "id": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
    "author": "Robrecht Cannoodt <rcannood@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #11 from dynverse/devel\n\ndyndimred 1.0.4",
    "time": 1616489442
  },
  "_maintainer": {
    "name": "Robrecht Cannoodt",
    "email": "rcannood@gmail.com",
    "login": "rcannood",
    "linkedin": "in/robrechtcannoodt",
    "orcid": "0000-0003-3641-729X",
    "description": "CEO and Founder at @edaro",
    "uuid": 553642
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "dynutils",
      "version": ">= 1.0.5",
      "role": "Imports"
    },
    {
      "package": "irlba",
      "role": "Imports"
    },
    {
      "package": "lmds",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "diffusionMap",
      "role": "Suggests"
    },
    {
      "package": "fastICA",
      "role": "Suggests"
    },
    {
      "package": "igraph",
      "role": "Suggests"
    },
    {
      "package": "lle",
      "role": "Suggests"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "Matrix",
      "role": "Suggests"
    },
    {
      "package": "RANN",
      "role": "Suggests"
    },
    {
      "package": "Rtsne",
      "role": "Suggests"
    },
    {
      "package": "smacof",
      "role": "Suggests"
    },
    {
      "package": "uwot",
      "role": "Suggests"
    }
  ],
  "_owner": "dynverse",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 8,
  "_contributors": [
    {
      "user": "rcannood",
      "count": 99,
      "uuid": 553642
    },
    {
      "user": "zouter",
      "count": 77,
      "uuid": 5727377
    },
    {
      "user": "helena-todd",
      "count": 1,
      "uuid": 17719754
    }
  ],
  "_userbio": {
    "uuid": 31854945,
    "type": "organization",
    "name": "dynverse: benchmarking, constructing and interpreting single-cell trajectories",
    "followers": 66,
    "description": "The dynverse is an open set of packages to benchmark, construct and interpret single-cell trajectories. See https://dynverse.org for an overview"
  },
  "_downloads": {
    "count": 384,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dyndimred"
  },
  "_devurl": "https://github.com/dynverse/dyndimred",
  "_searchresults": 32,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/dyndimred.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dynverse/dyndimred",
  "_realowner": "dynverse",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.1",
      "date": "2019-05-24"
    },
    {
      "version": "1.0.2",
      "date": "2019-08-07"
    },
    {
      "version": "1.0.3",
      "date": "2020-03-08"
    },
    {
      "version": "1.0.4",
      "date": "2021-03-23"
    }
  ],
  "_exports": [
    "dimred",
    "dimred_dm_destiny",
    "dimred_dm_diffusionmap",
    "dimred_ica",
    "dimred_knn_fr",
    "dimred_landmark_mds",
    "dimred_lle",
    "dimred_mds",
    "dimred_mds_isomds",
    "dimred_mds_sammon",
    "dimred_mds_smacof",
    "dimred_pca",
    "dimred_tsne",
    "dimred_umap",
    "list_dimred_methods"
  ],
  "_help": [
    {
      "page": "dimred",
      "title": "Perform simple dimensionality reduction",
      "topics": [
        "dimred",
        "dimred_dm_destiny",
        "dimred_dm_diffusionmap",
        "dimred_ica",
        "dimred_knn_fr",
        "dimred_landmark_mds",
        "dimred_lle",
        "dimred_mds",
        "dimred_mds_isomds",
        "dimred_mds_sammon",
        "dimred_mds_smacof",
        "dimred_pca",
        "list_dimred_methods"
      ]
    },
    {
      "page": "dimred_tsne",
      "title": "tSNE",
      "topics": [
        "dimred_tsne"
      ]
    },
    {
      "page": "dimred_umap",
      "title": "UMAP",
      "topics": [
        "dimred_umap"
      ]
    },
    {
      "page": "dyndimred",
      "title": "Common dimensionality reduction methods",
      "topics": [
        "dyndimred"
      ]
    }
  ],
  "_readme": "https://github.com/dynverse/dyndimred/raw/HEAD/README.md",
  "_rundeps": [
    "assertthat",
    "cli",
    "crayon",
    "desc",
    "dplyr",
    "dynutils",
    "generics",
    "glue",
    "irlba",
    "lattice",
    "lifecycle",
    "lmds",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "proxyC",
    "purrr",
    "R6",
    "Rcpp",
    "RcppArmadillo",
    "remotes",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 4.40823996531185,
  "_indexed": true,
  "_nocasepkg": "dyndimred",
  "_universes": [
    "dynverse",
    "rcannood"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.4",
      "date": "2026-07-14T06:11:16.000Z",
      "distro": "resolute",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/2d67fdb79e10ae06b61ff7d9d83e434d38fea0e32d2d99cf208a2c3733a1bb11",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.4",
      "date": "2026-07-14T06:10:33.000Z",
      "distro": "resolute",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/7f23d35e14b2f360792852e4210662fc8f6e88dc0fe42ef828b6c3912fb4afe3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.4",
      "date": "2026-07-14T06:09:00.000Z",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/50d474628425c8e842cbbba341dc9d2c8e7ab0b9a30d49479da69554d1ec6dd0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.4",
      "date": "2026-07-14T06:09:03.000Z",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/7de3e2f77e3f6d9fc963a7148c830a00c1bc3fe491a0e700bc69616861edc2a3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.4",
      "date": "2026-07-14T06:10:23.000Z",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/371064c7fc2ed59c1a56d07afd2c9a62edbe66afae2fe21cf7be3003b204ad12",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-07-14T06:09:12.000Z",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/3e7ecb74881293517a7fada0f431c4e0b0e30a3c1cd4975cb9e818feb4c94f38",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-07-14T06:09:11.000Z",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/1ff59064a82bccd41cecb537c30bfb228b1a957f0563570646c3f7127a14e17d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-07-14T06:09:26.000Z",
      "commit": "b85e9f42a78bcf44e4e5de31beefa56a9cecf604",
      "fileid": "https://r2.ropensci.org/701d0e1ef80d4592becfb277bc75b5c80968d972ea1cd35c323bd1b1a445c107",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dynverse/actions/runs/29310211210"
    }
  ]
}