Type: Package
Package: dyngen
Title: A Multi-Modal Simulator for Spearheading Single-Cell Omics
        Analyses
Version: 1.1.1
Authors@R: 
    c(person(given = "Robrecht",
             family = "Cannoodt",
             role = c("aut", "cre", "cph"),
             email = "rcannood@gmail.com",
             comment = c(ORCID = "0000-0003-3641-729X")),
      person(given = "Wouter",
             family = "Saelens",
             role = "aut",
             email = "wouter.saelens@gmail.com",
             comment = c(ORCID = "0000-0002-7114-6248")))
Description: A novel, multi-modal simulation engine for studying
        dynamic cellular processes at single-cell resolution. 'dyngen'
        is more flexible than current single-cell simulation engines.
        It allows better method development and benchmarking, thereby
        stimulating development and testing of novel computational
        methods. Cannoodt et al. (2021)
        <doi:10.1038/s41467-021-24152-2>.
License: MIT + file LICENSE
URL: https://dyngen.dynverse.org, https://github.com/dynverse/dyngen
BugReports: https://github.com/dynverse/dyngen/issues
Depends: R (>= 4.1.0)
Imports: assertthat, dplyr (>= 1.1.0), dynutils (>= 1.0.10), ggplot2,
        ggraph (>= 2.0), GillespieSSA2 (>= 0.2.6), grDevices, grid,
        igraph (>= 1.3.0), lmds, Matrix, methods, patchwork, pbapply,
        purrr, rlang (>= 0.4.1), stats, tibble, tidygraph, tidyr,
        tidyselect, utils, viridis
Suggests: anndataR, ggrepel, covr, dynwrap (>= 1.2.0), R.rsp,
        rmarkdown, Seurat, SingleCellExperiment (>= 1.5.3),
        SummarizedExperiment, testthat
VignetteBuilder: R.rsp
biocViews:
Encoding: UTF-8
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/Needs/website: dynverse/dyno, bioc::countsimQC, tidyverse
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev git libglpk-dev
        libicu-dev libxml2-dev libx11-dev
Repository: https://dynverse.r-universe.dev
Date/Publication: 2026-04-01 07:37:57 UTC
RemoteUrl: https://github.com/dynverse/dyngen
RemoteRef: HEAD
RemoteSha: 620b3e8fabf9f6ee50362f9d38fb27eed2725b47
NeedsCompilation: no
Packaged: 2026-07-04 02:15:41 UTC; root
Author: Robrecht Cannoodt [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-3641-729X>),
  Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>