Package: anndata 0.7.5.6
Robrecht Cannoodt
anndata: 'anndata' for R
A 'reticulate' wrapper for the Python package 'anndata'. Provides a scalable way of keeping track of data and learned annotations. Used to read from and write to the h5ad file format.
Authors:
anndata_0.7.5.6.tar.gz
anndata_0.7.5.6.zip(r-4.5)anndata_0.7.5.6.zip(r-4.4)anndata_0.7.5.6.zip(r-4.3)
anndata_0.7.5.6.tgz(r-4.4-any)anndata_0.7.5.6.tgz(r-4.3-any)
anndata_0.7.5.6.tar.gz(r-4.5-noble)anndata_0.7.5.6.tar.gz(r-4.4-noble)
anndata_0.7.5.6.tgz(r-4.4-emscripten)anndata_0.7.5.6.tgz(r-4.3-emscripten)
anndata.pdf |anndata.html✨
anndata/json (API)
NEWS
| # Install 'anndata' in R: |
| install.packages('anndata', repos = c('https://dynverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dynverse/anndata/issues
Last updated 6 days agofrom:0e1d0633a2. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 15 2024 |
| R-4.5-win | NOTE | Nov 15 2024 |
| R-4.5-linux | NOTE | Nov 15 2024 |
| R-4.4-win | NOTE | Nov 15 2024 |
| R-4.4-mac | NOTE | Nov 15 2024 |
| R-4.3-win | OK | Nov 15 2024 |
| R-4.3-mac | OK | Nov 15 2024 |
Exports:AnnDataAnnDataR6concatinstall_anndataLayersLayersR6RawRawR6read_csvread_excelread_h5adread_hdfread_loomread_mtxread_textread_umi_toolsread_zarrwrite_csvswrite_h5adwrite_loomwrite_zarr
Dependencies:assertthatherejsonlitelatticeMatrixpngR6rappdirsRcppRcppTOMLreticulaterlangrprojrootwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| anndata - Annotated Data | anndata-package anndata |
| Test if two objects objects are equal | all.equal.AnnDataR6 all.equal.LayersR6 all.equal.RawR6 |
| Create an Annotated Data Matrix | AnnData AnnDataR6 |
| concat | concat |
| AnnData Helpers | as.data.frame.AnnDataR6 as.matrix.AnnDataR6 dim.AnnDataR6 dimnames.AnnDataR6 dimnames<-.AnnDataR6 py_to_r.anndata._core.anndata.AnnData py_to_r.anndata._core.sparse_dataset.SparseDataset py_to_r.h5py._hl.dataset.Dataset r_to_py.AnnDataR6 t.AnnDataR6 [.AnnDataR6 |
| Raw Helpers | as.matrix.RawR6 dim.RawR6 dimnames.RawR6 py_to_r.anndata._core.raw.Raw r_to_py.RawR6 [.RawR6 |
| Install anndata | install_anndata |
| Create a Layers object | Layers LayersR6 |
| Layers Helpers | length.LayersR6 names.LayersR6 py_to_r.anndata._core.aligned_mapping.LayersBase r_to_py.LayersR6 [.LayersR6 [<-.LayersR6 [[.LayersR6 [[<-.LayersR6 |
| Convert between Python and R objects | names.collections.abc.Mapping py_to_r.collections.abc.KeysView py_to_r.collections.abc.Mapping py_to_r.collections.abc.Set py_to_r.pandas.core.indexes.base.Index r-py-conversion [.collections.abc.Mapping [<-.collections.abc.MutableMapping [[.collections.abc.Mapping [[<-.collections.abc.MutableMapping |
| Create a Raw object | Raw RawR6 |
| read_csv | read_csv |
| read_excel | read_excel |
| read_h5ad | read_h5ad |
| read_hdf | read_hdf |
| read_loom | read_loom |
| read_mtx | read_mtx |
| read_text | read_text |
| read_umi_tools | read_umi_tools |
| Read from a hierarchical Zarr array store. | read_zarr |
| Write annotation to .csv files. | write_csvs |
| Write .h5ad-formatted hdf5 file. | write_h5ad |
| Write .loom-formatted hdf5 file. | write_loom |
| Write a hierarchical Zarr array store. | write_zarr |
