Package: babelwhale 1.2.0
Robrecht Cannoodt
babelwhale: Talking to 'Docker' and 'Singularity' Containers
Provides a unified interface to interact with 'docker' and 'singularity' containers. You can execute a command inside a container, mount a volume or copy a file.
Authors:
babelwhale_1.2.0.tar.gz
babelwhale_1.2.0.zip(r-4.5)babelwhale_1.2.0.zip(r-4.4)babelwhale_1.2.0.zip(r-4.3)
babelwhale_1.2.0.tgz(r-4.4-any)babelwhale_1.2.0.tgz(r-4.3-any)
babelwhale_1.2.0.tar.gz(r-4.5-noble)babelwhale_1.2.0.tar.gz(r-4.4-noble)
babelwhale_1.2.0.tgz(r-4.4-emscripten)babelwhale_1.2.0.tgz(r-4.3-emscripten)
babelwhale.pdf |babelwhale.html✨
babelwhale/json (API)
NEWS
| # Install 'babelwhale' in R: |
| install.packages('babelwhale', repos = c('https://dynverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dynverse/babelwhale/issues
Last updated 1 years agofrom:61e5ebfef0. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 05 2024 |
| R-4.5-win | OK | Nov 05 2024 |
| R-4.5-linux | OK | Nov 05 2024 |
| R-4.4-win | OK | Nov 05 2024 |
| R-4.4-mac | OK | Nov 05 2024 |
| R-4.3-win | OK | Nov 05 2024 |
| R-4.3-mac | OK | Nov 05 2024 |
Exports:copy_filecreate_configcreate_docker_configcreate_singularity_configget_default_configlist_docker_imagespull_containerread_filerunrun_auto_mountset_default_configtest_docker_installationtest_singularity_installation
Dependencies:assertthatclicrayondescdigestdplyrdynutilsfansifsgenericsgluelatticelifecyclemagrittrMatrixpillarpkgconfigprocessxproxyCpspurrrR6RcppRcppArmadilloremotesrlangstringistringrtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Talking to both Docker and Singularity containers from R | babelwhale |
| Copy a file from a container to the host system | copy_file |
| Backend configuration for containerisation | create_config create_docker_config create_singularity_config get_default_config set_default_config |
| List docker containers | list_docker_images |
| Pull a container from dockerhub | pull_container |
| Read a file from a container | read_file |
| Run a containerised command, and wait until finished | run |
| Run a containerised command with automatic mounting of files | run_auto_mount |
| Determine the cached path of singularity images | singularity_image_path |
| Tests whether docker is correctly installed and available | test_docker_installation |
| Tests whether singularity is correctly installed and available | test_singularity_installation |
