Package: babelwhale 1.2.0

Robrecht Cannoodt

babelwhale: Talking to 'Docker' and 'Singularity' Containers

Provides a unified interface to interact with 'docker' and 'singularity' containers. You can execute a command inside a container, mount a volume or copy a file.

Authors:Robrecht Cannoodt [aut, cre], Wouter Saelens [aut], Joel Nitta [aut]

babelwhale_1.2.0.tar.gz
babelwhale_1.2.0.zip(r-4.7)babelwhale_1.2.0.zip(r-4.6)babelwhale_1.2.0.zip(r-4.5)
babelwhale_1.2.0.tgz(r-4.6-any)babelwhale_1.2.0.tgz(r-4.5-any)
babelwhale_1.2.0.tar.gz(r-4.7-any)babelwhale_1.2.0.tar.gz(r-4.6-any)
babelwhale_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
babelwhale/json (API)
NEWS

# Install 'babelwhale' in R:

install.packages('babelwhale', repos = c('https://dynverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dynverse/babelwhale/issues

On CRAN:

5.09 score 24 stars 1 packages 17 scripts 501 downloads 13 exports 32 dependencies

Last updated from:61e5ebfef0. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	139
source / vignettes	OK	159
linux-release-x86_64	OK	135
macos-release-arm64	OK	119
macos-oldrel-arm64	OK	135
windows-devel	OK	101
windows-release	OK	123
windows-oldrel	OK	102
wasm-release	OK	105

Exports:copy_file create_config create_docker_config create_singularity_config get_default_config list_docker_images pull_container read_file run run_auto_mount set_default_config test_docker_installation test_singularity_installation

Dependencies:assertthat cli crayon desc digest dplyr dynutils fs generics glue lattice lifecycle magrittr Matrix pillar pkgconfig processx proxyC ps purrr R6 Rcpp RcppArmadillo remotes rlang stringi stringr tibble tidyselect utf8 vctrs withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Talking to both Docker and Singularity containers from R	babelwhale
Copy a file from a container to the host system	copy_file
Backend configuration for containerisation	create_config create_docker_config create_singularity_config get_default_config set_default_config
List docker containers	list_docker_images
Pull a container from dockerhub	pull_container
Read a file from a container	read_file
Run a containerised command, and wait until finished	run
Run a containerised command with automatic mounting of files	run_auto_mount
Determine the cached path of singularity images	singularity_image_path
Tests whether docker is correctly installed and available	test_docker_installation
Tests whether singularity is correctly installed and available	test_singularity_installation